odm_api.FilesIntegrationAsCuratorApi

All URIs are relative to http://localhost

Method	HTTP request	Description
get_files_by_study_as_curator	GET /api/v1/as-curator/integration/link/files/by/study/{id}	Retrieve file's metadata by study ID

get_files_by_study_as_curator

List[object] get_files_by_study_as_curator(id, include_contents=include_contents)

Retrieve file's metadata by study ID

Example

• Api Key Authentication (Access-token):
• Api Key Authentication (Genestack-API-Token):

import odm_api
from odm_api.rest import ApiException
from pprint import pprint

# Defining the host is optional and defaults to http://localhost
# See configuration.py for a list of all supported configuration parameters.
configuration = odm_api.Configuration(
    host = "http://localhost"
)

# The client must configure the authentication and authorization parameters
# in accordance with the API server security policy.
# Examples for each auth method are provided below, use the example that
# satisfies your auth use case.

# Configure API key authorization: Access-token
configuration.api_key['Access-token'] = os.environ["API_KEY"]

# Uncomment below to setup prefix (e.g. Bearer) for API key, if needed
# configuration.api_key_prefix['Access-token'] = 'Bearer'

# Configure API key authorization: Genestack-API-Token
configuration.api_key['Genestack-API-Token'] = os.environ["API_KEY"]

# Uncomment below to setup prefix (e.g. Bearer) for API key, if needed
# configuration.api_key_prefix['Genestack-API-Token'] = 'Bearer'

# Enter a context with an instance of the API client
with odm_api.ApiClient(configuration) as api_client:
    # Create an instance of the API class
    api_instance = odm_api.FilesIntegrationAsCuratorApi(api_client)
    id = 'id_example' # str | Unique identifier (accession) of the object.
    include_contents = False # bool | Select `true` in order to include file structure (contents) for .h5, .h5ad, .zip, .gz to the response. (optional) (default to False)

    try:
        # Retrieve file's metadata by study ID
        api_response = api_instance.get_files_by_study_as_curator(id, include_contents=include_contents)
        print("The response of FilesIntegrationAsCuratorApi->get_files_by_study_as_curator:\n")
        pprint(api_response)
    except Exception as e:
        print("Exception when calling FilesIntegrationAsCuratorApi->get_files_by_study_as_curator: %s\n" % e)

Parameters

Name	Type	Description	Notes
id	str	Unique identifier (accession) of the object.
include_contents	bool	Select `true` in order to include file structure (contents) for .h5, .h5ad, .zip, .gz to the response.	[optional] [default to False]

Return type

List[object]

Authorization

Access-token, Genestack-API-Token

HTTP request headers

• Content-Type: Not defined
• Accept: application/json, text/tab-separated-values

HTTP response details

Status code	Description	Response headers
200	The request was successful. The returned value is a list of objects.	-
400	Invalid data in the request. See the error message for details.	-
401	User is not authenticated. Please supply a valid Access Token in the `Authorization` HTTP header (e.g. Authorization: bearer [token]) or Genestack API token in the `Genestack-API-Token` header (this token may be obtained from the Genestack UI Profile page).	-
404	Object with provided accession could not be found in ODM.	-
500	An internal server error occurred. This indicates an unexpected failure in the Genestack system, please file a bug report to support@genestack.com, including the error details.	-

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